IL_4V9S_099

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V9S|1|BA|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_099 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.0869

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4V9S|1|BA|G|1057
4V9S|1|BA|U|1058
4V9S|1|BA|C|1059
*
4V9S|1|BA|G|1195
4V9S|1|BA|C|1196

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BN

50S Ribosomal Protein L13

Chain BU

50S Ribosomal Protein L20