IL_4V9S_107
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9S_107 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0353
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V9S|1|BA|A|1308
4V9S|1|BA|U|1309
4V9S|1|BA|G|1310
4V9S|1|BA|A|1311
4V9S|1|BA|G|1312
4V9S|1|BA|U|1313
4V9S|1|BA|A|1314
4V9S|1|BA|A|1315
*
4V9S|1|BA|U|2033
4V9S|1|BA|G|2034
4V9S|1|BA|A|2035
4V9S|1|BA|A|2036
4V9S|1|BA|A|2037
4V9S|1|BA|U|2038
4V9S|1|BA|U|2039
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- 50S Ribosomal Protein L32
- Chain BF
- 50S Ribosomal Protein L4
- Chain BW
- 50S Ribosomal Protein L22
Coloring options: