IL_4V9S_114

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

4V9S|1|BA|G|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_114 not in the Motif Atlas

Homologous match to IL_7RQB_056

Geometric discrepancy: 0.19

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V9S|1|BA|U|1479
4V9S|1|BA|A|1480
4V9S|1|BA|G|1481
*
4V9S|1|BA|C|1604
4V9S|1|BA|A|1605
4V9S|1|BA|G|1606
4V9S|1|BA|G|1607

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S Ribosomal Protein L2