IL_4V9S_123

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_123 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0609

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9S|1|BA|G|1698
4V9S|1|BA|A|1699
4V9S|1|BA|G|1700
4V9S|1|BA|A|1701
4V9S|1|BA|A|1702
4V9S|1|BA|C|1703
*
4V9S|1|BA|G|2026
4V9S|1|BA|A|2027
4V9S|1|BA|C|2028

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BR

50S Ribosomal Protein L17