IL_4V9S_127

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V9S|1|BA|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_127 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1206

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V9S|1|BA|C|1733
4V9S|1|BA|G|1734
4V9S|1|BA|U|1735
4V9S|1|BA|A|1736
4V9S|1|BA|A|1737
4V9S|1|BA|C|1738
*
4V9S|1|BA|G|1743
4V9S|1|BA|G|1744
4V9S|1|BA|A|1745
4V9S|1|BA|G|1746
4V9S|1|BA|A|1747
4V9S|1|BA|A|1748
4V9S|1|BA|G|1749

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S Ribosomal Protein L2