IL_4V9S_161

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V9S|1|BA|A|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_161 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0436

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9S|1|BA|G|2750
4V9S|1|BA|A|2751
4V9S|1|BA|U|2752
4V9S|1|BA|A|2753
4V9S|1|BA|A|2754
4V9S|1|BA|C|2755
*
4V9S|1|BA|G|2775
4V9S|1|BA|G|2776
4V9S|1|BA|A|2777
4V9S|1|BA|A|2778
4V9S|1|BA|G|2779
4V9S|1|BA|C|2780

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36

Chain BH

50S Ribosomal Protein L6

Chain BN

50S Ribosomal Protein L13