IL_4V9S_187

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_187 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1416

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9S|1|CA|G|409
4V9S|1|CA|G|410
4V9S|1|CA|A|411
4V9S|1|CA|A|412
4V9S|1|CA|G|413
4V9S|1|CA|A|414
4V9S|1|CA|A|415
4V9S|1|CA|G|416
*
4V9S|1|CA|U|427
4V9S|1|CA|G|428
4V9S|1|CA|U|429
4V9S|1|CA|A|430
4V9S|1|CA|A|431
4V9S|1|CA|A|432
4V9S|1|CA|C|433

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S Ribosomal Protein S4