IL_4V9S_222

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUGC*GCUAAUC

Length

12 nucleotides

Bulged bases

4V9S|1|CA|U|1257, 4V9S|1|CA|U|1278, 4V9S|1|CA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|CA|G|1255
4V9S|1|CA|A|1256
4V9S|1|CA|U|1257
4V9S|1|CA|G|1258
4V9S|1|CA|C|1259
*
4V9S|1|CA|G|1276
4V9S|1|CA|C|1277
4V9S|1|CA|U|1278
4V9S|1|CA|A|1279
4V9S|1|CA|A|1280
4V9S|1|CA|U|1281
4V9S|1|CA|C|1282

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CI

30S Ribosomal Protein S9

Chain CJ

30S Ribosomal Protein S10

Chain CN

30S Ribosomal Protein S14