IL_4V9S_277

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_277 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.053

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9S|1|DA|A|1262
4V9S|1|DA|U|1263
4V9S|1|DA|G|1264
4V9S|1|DA|A|1265
4V9S|1|DA|G|1266
4V9S|1|DA|U|1267
4V9S|1|DA|A|1268
4V9S|1|DA|A|1269
*
4V9S|1|DA|U|2011
4V9S|1|DA|G|2012
4V9S|1|DA|A|2013
4V9S|1|DA|A|2014
4V9S|1|DA|A|2015
4V9S|1|DA|U|2016
4V9S|1|DA|U|2017

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DF

50S Ribosomal Protein L4

Chain DW

50S Ribosomal Protein L22