IL_4V9S_348

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

4V9S|1|BA|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_348 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.056

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4V9S|1|BA|G|1713
4V9S|1|BA|G|1714
4V9S|1|BA|A|1715
4V9S|1|BA|A|1716
4V9S|1|BA|C|1717
4V9S|1|BA|U|1718
4V9S|1|BA|C|1719
4V9S|1|BA|U|1720
4V9S|1|BA|G|1721
*
4V9S|1|BA|C|2012
4V9S|1|BA|U|2013
4V9S|1|BA|G|2014
4V9S|1|BA|U|2015
4V9S|1|BA|C|2016

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BO

50S Ribosomal Protein L14

Chain BT

50S Ribosomal Protein L19