IL_4V9S_350

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGU*ACCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_350 not in the Motif Atlas

Geometric match to IL_7SZU_003

Geometric discrepancy: 0.2923

The information below is about IL_7SZU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

4V9S|1|CA|G|657
4V9S|1|CA|G|658
4V9S|1|CA|U|659
*
4V9S|1|CA|A|746
4V9S|1|CA|C|747
4V9S|1|CA|C|748
4V9S|1|CA|C|749

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CO

30S Ribosomal Protein S15