IL_4W23_026

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UACAGGAC*GGCCCUGUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94312.1

Basepair signature

cWW-cWW-cWW-cWW-cWW-cWW-R-bif-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4W23|1|2|U|530
4W23|1|2|A|531
4W23|1|2|C|532
4W23|1|2|A|533
4W23|1|2|G|534
4W23|1|2|G|535
4W23|1|2|A|536
4W23|1|2|C|537
*
4W23|1|2|G|546
4W23|1|2|G|547
4W23|1|2|C|548
4W23|1|2|C|549
4W23|1|2|C|550
4W23|1|2|U|551
4W23|1|2|G|552
4W23|1|2|U|553
4W23|1|2|A|554

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain e

Ribosomal protein eS30