IL_4W23_028

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGGCAAGUCU*AGCU

Length

15 nucleotides

Bulged bases

4W23|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32902.2

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

4W23|1|2|A|599
4W23|1|2|G|600
4W23|1|2|G|601
4W23|1|2|G|602
4W23|1|2|C|603
4W23|1|2|A|604
4W23|1|2|A|605
4W23|1|2|G|606
4W23|1|2|U|607
4W23|1|2|C|608
4W23|1|2|U|609
*
4W23|1|2|A|634
4W23|1|2|G|635
4W23|1|2|C|636
4W23|1|2|U|637

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uS5

Chain D

Ribosomal protein uS3

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS12

Chain e

Ribosomal protein eS30