IL_4W23_029

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGUGCCAG*CGGUAAUUCCA

Length

20 nucleotides

Bulged bases

4W23|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56616.1

Basepair signature

cWW-R-cWW-R-R-cHH-cWW-cSW-L-L-tWW-R-R-R-cWW

Number of instances in this motif group

1

Unit IDs

4W23|1|2|U|609
4W23|1|2|G|610
4W23|1|2|G|611
4W23|1|2|U|612
4W23|1|2|G|613
4W23|1|2|C|614
4W23|1|2|C|615
4W23|1|2|A|616
4W23|1|2|G|617
*
4W23|1|2|C|624
4W23|1|2|G|625
4W23|1|2|G|626
4W23|1|2|U|627
4W23|1|2|A|628
4W23|1|2|A|629
4W23|1|2|U|630
4W23|1|2|U|631
4W23|1|2|C|632
4W23|1|2|C|633
4W23|1|2|A|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain X

Ribosomal protein uS12

Chain e

Ribosomal protein eS30