IL_4W23_038

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAGAGUGUUCAAAGCAG*CUGGAUA

Length

24 nucleotides

Bulged bases

4W23|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24658.1

Basepair signature

cWW-R-bif-tSH-cSH-R-R-R-bif-tSH-bif-L-tWH-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4W23|1|2|U|815
4W23|1|2|A|816
4W23|1|2|G|817
4W23|1|2|A|818
4W23|1|2|G|819
4W23|1|2|U|820
4W23|1|2|G|821
4W23|1|2|U|822
4W23|1|2|U|823
4W23|1|2|C|824
4W23|1|2|A|825
4W23|1|2|A|826
4W23|1|2|A|827
4W23|1|2|G|828
4W23|1|2|C|829
4W23|1|2|A|830
4W23|1|2|G|831
*
4W23|1|2|C|843
4W23|1|2|U|844
4W23|1|2|G|845
4W23|1|2|G|846
4W23|1|2|A|847
4W23|1|2|U|848
4W23|1|2|A|849

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain J

Ribosomal protein uS4

Chain Y

Ribosomal protein eS24