IL_4W23_039

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCGC*GAGGCC

Length

13 nucleotides

Bulged bases

4W23|1|2|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77382.1

Basepair signature

cWW-L-R-cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4W23|1|2|G|873
4W23|1|2|G|874
4W23|1|2|A|875
4W23|1|2|C|876
4W23|1|2|C|877
4W23|1|2|G|878
4W23|1|2|C|879
*
4W23|1|2|G|907
4W23|1|2|A|908
4W23|1|2|G|909
4W23|1|2|G|910
4W23|1|2|C|911
4W23|1|2|C|912

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17