3D structure

PDB id
4W23 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AUUC*GGACCAGAGCGAAAGCAUUU
Length
24 nucleotides
Bulged bases
4W23|1|2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58965.1
Basepair signature
cWW-cWW-cWW-R-cWW-L-L-L-L-L-cWW-bif-R-tSH-R-R
Number of instances in this motif group
1

Unit IDs

4W23|1|2|A|938
4W23|1|2|U|939
4W23|1|2|U|940
4W23|1|2|C|941
*
4W23|1|2|G|985
4W23|1|2|G|986
4W23|1|2|A|987
4W23|1|2|C|988
4W23|1|2|C|989
4W23|1|2|A|990
4W23|1|2|G|991
4W23|1|2|A|992
4W23|1|2|G|993
4W23|1|2|C|994
4W23|1|2|G|995
4W23|1|2|A|996
4W23|1|2|A|997
4W23|1|2|A|998
4W23|1|2|G|999
4W23|1|2|C|1000
4W23|1|2|A|1001
4W23|1|2|U|1002
4W23|1|2|U|1003
4W23|1|2|U|1004

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein eS1
Chain N
Ribosomal protein uS15
Chain O
Ribosomal protein uS11
Chain a
Ribosomal protein eS26

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.6576 s
Application loaded.