IL_4W23_048

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

4W23|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90660.1

Basepair signature

cWW-bif-cWW-L-tSH-tHS-R-R-cWW

Number of instances in this motif group

1

Unit IDs

4W23|1|2|C|951
4W23|1|2|G|952
4W23|1|2|C|953
4W23|1|2|U|954
4W23|1|2|A|955
4W23|1|2|G|956
*
4W23|1|2|C|967
4W23|1|2|U|968
4W23|1|2|U|969
4W23|1|2|G|970
4W23|1|2|G|971
4W23|1|2|A|972
4W23|1|2|C|973
4W23|1|2|C|974
4W23|1|2|G|975

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain O

Ribosomal protein uS11