IL_4W23_056

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41766.10

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

88

Unit IDs

4W23|1|2|C|1230
4W23|1|2|C|1231
4W23|1|2|U|1232
4W23|1|2|G|1233
*
4W23|1|2|C|1525
4W23|1|2|G|1526
4W23|1|2|C|1527
4W23|1|2|G|1528

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein uS9

Chain S

Ribosomal protein uS13

Chain T

Ribosomal protein eS19

Chain U

Ribosomal protein uS10