IL_4W23_065

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

4W23|1|2|C|1403, 4W23|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74856.4

Basepair signature

cWW-cWW-cSH-R-cWW

Number of instances in this motif group

8

Unit IDs

4W23|1|2|A|1402
4W23|1|2|C|1403
4W23|1|2|U|1404
4W23|1|2|A|1405
4W23|1|2|G|1406
*
4W23|1|2|C|1440
4W23|1|2|U|1441
4W23|1|2|U|1442
4W23|1|2|C|1443
4W23|1|2|U|1444

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain Q

Ribosomal protein uS9

Chain U

Ribosomal protein uS10

Chain g

Ribosomal protein RACK1