IL_4W23_068

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCGAG

Length

10 nucleotides

Bulged bases

4W23|1|2|A|1474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70320.1

Basepair signature

cWW-tWH-R-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4W23|1|2|C|1453
4W23|1|2|A|1454
4W23|1|2|A|1455
4W23|1|2|G|1456
*
4W23|1|2|C|1470
4W23|1|2|C|1471
4W23|1|2|C|1472
4W23|1|2|G|1473
4W23|1|2|A|1474
4W23|1|2|G|1475

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain R

Ribosomal protein eS17

Chain c

Ribosomal protein eS28

Chain g

Ribosomal protein RACK1