IL_4W2E_071

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4W2E|1|A|G|1801, 4W2E|1|A|G|1816, 4W2E|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2E_071 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0719

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4W2E|1|A|U|1798
4W2E|1|A|G|1799
4W2E|1|A|C|1800
4W2E|1|A|G|1801
4W2E|1|A|A|1802
4W2E|1|A|A|1803
4W2E|1|A|C|1804
*
4W2E|1|A|G|1813
4W2E|1|A|G|1814
4W2E|1|A|A|1815
4W2E|1|A|G|1816
4W2E|1|A|G|1817
4W2E|1|A|U|1818
4W2E|1|A|A|1819
4W2E|1|A|U|1820
4W2E|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA