IL_4W2E_099

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2E_099 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0749

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4W2E|1|A|A|2459
4W2E|1|A|U|2460
4W2E|1|A|C|2461
*
4W2E|1|A|G|2489
4W2E|1|A|G|2490
4W2E|1|A|U|2491
4W2E|1|A|U|2492
4W2E|1|A|U|2493

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L16

Chain y

50S ribosomal protein L9, Elongation factor 4