IL_4W2F_018

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0823

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4W2F|1|AA|G|409
4W2F|1|AA|G|410
4W2F|1|AA|A|411
4W2F|1|AA|A|412
4W2F|1|AA|G|413
4W2F|1|AA|A|414
4W2F|1|AA|A|415
4W2F|1|AA|G|416
*
4W2F|1|AA|U|427
4W2F|1|AA|G|428
4W2F|1|AA|U|429
4W2F|1|AA|A|430
4W2F|1|AA|A|431
4W2F|1|AA|A|432
4W2F|1|AA|C|433

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal Protein S4