3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CUGAC*GGUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2F_091 not in the Motif Atlas
Homologous match to IL_7RQB_026
Geometric discrepancy: 0.0482
The information below is about IL_7RQB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_94165.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4W2F|1|BA|C|893
4W2F|1|BA|U|894
4W2F|1|BA|G|895
4W2F|1|BA|A|896
4W2F|1|BA|C|897
*
4W2F|1|BA|G|973
4W2F|1|BA|G|974
4W2F|1|BA|U|975
4W2F|1|BA|G|976

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B3
50S Ribosomal Protein L30

Coloring options:


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