IL_4W2F_103

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4W2F|1|BA|U|1187, 4W2F|1|BA|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_103 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0731

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4W2F|1|BA|C|1064
4W2F|1|BA|U|1065
4W2F|1|BA|A|1066
4W2F|1|BA|A|1067
4W2F|1|BA|G|1068
4W2F|1|BA|U|1069
4W2F|1|BA|G|1070
*
4W2F|1|BA|C|1185
4W2F|1|BA|U|1186
4W2F|1|BA|U|1187
4W2F|1|BA|A|1188
4W2F|1|BA|A|1189
4W2F|1|BA|G|1190

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36

Chain BN

50S Ribosomal Protein L13