IL_4W2F_106

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4W2F|1|BA|A|1092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_106 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.134

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4W2F|1|BA|C|1089
4W2F|1|BA|G|1090
4W2F|1|BA|A|1091
4W2F|1|BA|A|1092
4W2F|1|BA|G|1093
4W2F|1|BA|A|1094
4W2F|1|BA|C|1095
4W2F|1|BA|A|1096
4W2F|1|BA|G|1097
*
4W2F|1|BA|U|1154
4W2F|1|BA|C|1155
4W2F|1|BA|G|1156
4W2F|1|BA|A|1157
4W2F|1|BA|G|1158

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S Ribosomal Protein L6