3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
4W2F|1|BA|A|1134
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2F_107 not in the Motif Atlas
Geometric match to IL_5D8H_003
Geometric discrepancy: 0.2128
The information below is about IL_5D8H_003
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

4W2F|1|BA|G|1133
4W2F|1|BA|A|1134
4W2F|1|BA|G|1135
4W2F|1|BA|U|1136
4W2F|1|BA|G|1137
*
4W2F|1|BA|C|1146
4W2F|1|BA|U|1147
4W2F|1|BA|C|1148

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B9
50S Ribosomal Protein L36

Coloring options:


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