3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4W2F|1|BA|G|1746
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2F_131 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.0989
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4W2F|1|BA|C|1733
4W2F|1|BA|G|1734
4W2F|1|BA|U|1735
4W2F|1|BA|A|1736
4W2F|1|BA|A|1737
4W2F|1|BA|C|1738
*
4W2F|1|BA|G|1743
4W2F|1|BA|G|1744
4W2F|1|BA|A|1745
4W2F|1|BA|G|1746
4W2F|1|BA|A|1747
4W2F|1|BA|A|1748
4W2F|1|BA|G|1749

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
50S Ribosomal Protein L2

Coloring options:


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