IL_4W2F_239

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_239 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0918

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4W2F|1|CA|C|1431
4W2F|1|CA|G|1432
4W2F|1|CA|A|1433
4W2F|1|CA|A|1434
4W2F|1|CA|G|1435
*
4W2F|1|CA|C|1466
4W2F|1|CA|G|1467
4W2F|1|CA|A|1468
4W2F|1|CA|G|1469

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal Protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S Ribosomal Protein L19