IL_4W2F_269
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2F_269 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1014
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4W2F|1|DA|C|857
4W2F|1|DA|U|858
4W2F|1|DA|G|859
4W2F|1|DA|U|860
4W2F|1|DA|A|861
4W2F|1|DA|G|862
*
4W2F|1|DA|C|915
4W2F|1|DA|G|916
4W2F|1|DA|A|917
4W2F|1|DA|A|918
4W2F|1|DA|G|919
4W2F|1|DA|G|920
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D0
- 50S Ribosomal Protein L27
- Chain D3
- 50S Ribosomal Protein L30
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S Ribosomal Protein L16
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