IL_4W2F_306

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4W2F|1|DA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_306 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1153

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4W2F|1|DA|C|1686
4W2F|1|DA|G|1687
4W2F|1|DA|U|1688
4W2F|1|DA|A|1689
4W2F|1|DA|A|1690
4W2F|1|DA|C|1691
*
4W2F|1|DA|G|1696
4W2F|1|DA|G|1697
4W2F|1|DA|A|1698
4W2F|1|DA|G|1699
4W2F|1|DA|A|1700
4W2F|1|DA|A|1701
4W2F|1|DA|G|1702

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S Ribosomal Protein L2