IL_4W2F_319

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4W2F|1|DA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_319 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.0633

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4W2F|1|DA|G|2070
4W2F|1|DA|A|2071
*
4W2F|1|DA|U|2438
4W2F|1|DA|A|2439
4W2F|1|DA|C|2440
4W2F|1|DA|C|2441

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain DD

50S Ribosomal Protein L2