IL_4W2F_324

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2F|1|DA|G|2124
4W2F|1|DA|G|2125
4W2F|1|DA|A|2126
4W2F|1|DA|G|2127
4W2F|1|DA|C|2128
4W2F|1|DA|C|2129
*
4W2F|1|DA|G|2159
4W2F|1|DA|G|2160
4W2F|1|DA|C|2161
4W2F|1|DA|G|2162
4W2F|1|DA|C|2163
4W2F|1|DA|C|2164
4W2F|1|DA|G|2165
4W2F|1|DA|G|2166
4W2F|1|DA|U|2167
4W2F|1|DA|G|2168
4W2F|1|DA|A|2169
4W2F|1|DA|A|2170
4W2F|1|DA|A|2171
4W2F|1|DA|U|2172
4W2F|1|DA|A|2173
4W2F|1|DA|C|2174

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CY

Transfer RNA; tRNA