IL_4W2F_332
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 4W2F|1|DA|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2F_332 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.0659
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
4W2F|1|DA|A|2459
4W2F|1|DA|U|2460
4W2F|1|DA|C|2461
*
4W2F|1|DA|G|2489
4W2F|1|DA|G|2490
4W2F|1|DA|U|2491
4W2F|1|DA|U|2492
4W2F|1|DA|U|2493
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CW
- Transfer RNA; tRNA
- Chain D0
- 50S Ribosomal Protein L27
- Chain DQ
- 50S Ribosomal Protein L16
Coloring options: