IL_4W2F_336

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4W2F|1|DA|A|2572, 4W2F|1|DA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_336 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.0716

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4W2F|1|DA|C|2512
4W2F|1|DA|G|2513
*
4W2F|1|DA|C|2571
4W2F|1|DA|A|2572
4W2F|1|DA|C|2573
4W2F|1|DA|G|2574

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DE

50S Ribosomal Protein L3

Chain DN

50S Ribosomal Protein L13