IL_4W2F_354

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_354 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2186

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4W2F|1|DB|G|82
4W2F|1|DB|C|84
*
4W2F|1|DB|G|93
4W2F|1|DB|C|94
4W2F|1|DB|C|95

Current chains

Chain DB

5S Ribosomal RNA

Nearby chains

Chain D3

50S Ribosomal Protein L30

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S Ribosomal Protein L16

Chain DZ

50S Ribosomal Protein L25