IL_4W2G_019

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_019 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1274

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4W2G|1|AA|G|446
4W2G|1|AA|G|447
4W2G|1|AA|A|448
4W2G|1|AA|C|449
4W2G|1|AA|G|450
*
4W2G|1|AA|C|483
4W2G|1|AA|G|484
4W2G|1|AA|G|485
4W2G|1|AA|U|486
4W2G|1|AA|A|487
4W2G|1|AA|C|488

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal Protein S4

Chain AP

30S Ribosomal Protein S16