IL_4W2G_125

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4W2G|1|BA|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_125 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1115

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4W2G|1|BA|C|1733
4W2G|1|BA|G|1734
4W2G|1|BA|U|1735
4W2G|1|BA|A|1736
4W2G|1|BA|A|1737
4W2G|1|BA|C|1738
*
4W2G|1|BA|G|1743
4W2G|1|BA|G|1744
4W2G|1|BA|A|1745
4W2G|1|BA|G|1746
4W2G|1|BA|A|1747
4W2G|1|BA|A|1748
4W2G|1|BA|G|1749

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S Ribosomal Protein L2