IL_4W2G_221

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_221 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2457

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4W2G|1|CA|C|1118
4W2G|1|CA|C|1119
4W2G|1|CA|G|1120
*
4W2G|1|CA|C|1153
4W2G|1|CA|G|1154
4W2G|1|CA|G|1155

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CI

30S Ribosomal Protein S9

Chain CJ

30S Ribosomal Protein S10