IL_4W2G_263

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_263 not in the Motif Atlas

Homologous match to IL_7RQB_026

Geometric discrepancy: 0.0818

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4W2G|1|DA|C|846
4W2G|1|DA|U|847
4W2G|1|DA|G|848
4W2G|1|DA|A|849
4W2G|1|DA|C|850
*
4W2G|1|DA|G|927
4W2G|1|DA|G|928
4W2G|1|DA|U|930
4W2G|1|DA|G|931

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain BP

50S Ribosomal Protein L15

Chain D3

50S Ribosomal Protein L30