IL_4W2G_276

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4W2G|1|DA|U|1142, 4W2G|1|DA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_276 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0921

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4W2G|1|DA|C|1018
4W2G|1|DA|U|1019
4W2G|1|DA|A|1020
4W2G|1|DA|A|1021
4W2G|1|DA|G|1022
4W2G|1|DA|U|1023
4W2G|1|DA|G|1024
*
4W2G|1|DA|C|1140
4W2G|1|DA|U|1141
4W2G|1|DA|U|1142
4W2G|1|DA|A|1142|||A
4W2G|1|DA|A|1143
4W2G|1|DA|G|1144

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S Ribosomal Protein L36

Chain DH

50S Ribosomal Protein L6

Chain DN

50S Ribosomal Protein L13