3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UAG*CAGG
Length
7 nucleotides
Bulged bases
4W2G|1|DA|G|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2G_291 not in the Motif Atlas
Homologous match to IL_7RQB_056
Geometric discrepancy: 0.2211
The information below is about IL_7RQB_056
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_54997.7
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

4W2G|1|DA|U|1433
4W2G|1|DA|A|1434
4W2G|1|DA|G|1435
*
4W2G|1|DA|C|1557
4W2G|1|DA|A|1558
4W2G|1|DA|G|1559
4W2G|1|DA|G|1560

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DD
50S Ribosomal Protein L2

Coloring options:


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