IL_4W2G_299

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_299 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0512

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4W2G|1|DA|G|1651
4W2G|1|DA|A|1652
4W2G|1|DA|G|1653
4W2G|1|DA|A|1654
4W2G|1|DA|A|1655
4W2G|1|DA|C|1656
*
4W2G|1|DA|G|2004
4W2G|1|DA|A|2005
4W2G|1|DA|C|2006

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S Ribosomal Protein L3

Chain DR

50S Ribosomal Protein L17