IL_4W2H_001

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

4W2H|1|AA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_001 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.1104

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

4W2H|1|AA|U|30
4W2H|1|AA|G|31
4W2H|1|AA|A|32
*
4W2H|1|AA|U|552
4W2H|1|AA|A|553

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal Protein S4

Chain AL

30S Ribosomal Protein S12