IL_4W2H_020

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4W2H|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1037

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4W2H|1|AA|G|409
4W2H|1|AA|G|410
4W2H|1|AA|A|411
4W2H|1|AA|A|412
4W2H|1|AA|G|413
4W2H|1|AA|A|414
4W2H|1|AA|A|415
4W2H|1|AA|G|416
*
4W2H|1|AA|U|427
4W2H|1|AA|G|428
4W2H|1|AA|U|429
4W2H|1|AA|A|430
4W2H|1|AA|A|431
4W2H|1|AA|A|432
4W2H|1|AA|C|433

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal Protein S4