IL_4W2H_071

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_071 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0415

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4W2H|1|BA|U|228
4W2H|1|BA|G|229
4W2H|1|BA|A|230
4W2H|1|BA|G|231
4W2H|1|BA|U|232
4W2H|1|BA|A|233
4W2H|1|BA|G|234
*
4W2H|1|BA|C|242
4W2H|1|BA|G|243
4W2H|1|BA|A|244
4W2H|1|BA|A|245
4W2H|1|BA|A|246
4W2H|1|BA|G|247

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B8

50S Ribosomal Protein L35

Chain BP

50S Ribosomal Protein L15