IL_4W2H_094

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_094 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.248

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4W2H|1|BA|G|922
4W2H|1|BA|C|923
4W2H|1|BA|U|924
4W2H|1|BA|A|925
4W2H|1|BA|G|926
*
4W2H|1|BA|C|944
4W2H|1|BA|A|945
4W2H|1|BA|A|946
4W2H|1|BA|A|947
4W2H|1|BA|C|948

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BQ

50S Ribosomal Protein L16

Chain BZ

50S Ribosomal Protein L25