IL_4W2H_095

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGGG*CCUACC

Length

11 nucleotides

Bulged bases

4W2H|1|BA|A|942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_095 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.4879

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4W2H|1|BA|G|926
4W2H|1|BA|G|927
4W2H|1|BA|G|928
4W2H|1|BA|G|929
4W2H|1|BA|G|930
*
4W2H|1|BA|C|939
4W2H|1|BA|C|940
4W2H|1|BA|U|941
4W2H|1|BA|A|942
4W2H|1|BA|C|943
4W2H|1|BA|C|944

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BQ

50S Ribosomal Protein L16

Chain BZ

50S Ribosomal Protein L25