IL_4W2H_099

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_099 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.0469

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4W2H|1|BA|C|1050
4W2H|1|BA|C|1051
4W2H|1|BA|C|1052
4W2H|1|BA|C|1053
4W2H|1|BA|C|1054
4W2H|1|BA|A|1055
4W2H|1|BA|A|1056
4W2H|1|BA|G|1057
*
4W2H|1|BA|C|1196
4W2H|1|BA|G|1197

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BN

50S Ribosomal Protein L13

Chain BU

50S Ribosomal Protein L20